Classification Linear Mixed Effect Learner

Generalized linear model with random effects. Calls lme4::glmer() from lme4.

Initial parameter values

• family - Is set to stats::binomial(link = "logit").

Formula

Although most mlr3 learners don't allow to specify the formula manually, and automatically set it by valling task$formula(), this learner allows to set the formula because it's core functionality depends it. This means that it might not always use all features that are available in the task. Be aware, that this can sometimes lead to unexpected error messages, because mlr3 checks the compatibility between the learner and the task on all available features.

Dictionary

This Learner can be instantiated via the dictionary mlr_learners or with the associated sugar function lrn():

mlr_learners$get("classif.glmer")
lrn("classif.glmer")

Meta Information

• Task type: “classif”

• Predict Types: “response”, “prob”

• Feature Types: “logical”, “integer”, “numeric”, “factor”

• Required Packages: mlr3, lme4

Parameters

Id	Type	Default	Levels	Range
formula	untyped	formula		-
start	untyped			-
verbose	integer	0		\([0, \infty)\)
offset	untyped			-
contrasts	untyped			-
optimizer	character	-	Nelder_Mead, bobyqa, nlminbwrap, nloptwrap	-
restart_edge	logical	FALSE	TRUE, FALSE	-
boundary.tol	numeric	1e-05		\([0, \infty)\)
calc.derivs	logical	TRUE	TRUE, FALSE	-
check.nobs.vs.rankZ	character	ignore	ignore, warning, message, stop	-
check.nobs.vs.nlev	character	stop	ignore, warning, message, stop	-
check.nlev.gtreq.5	character	ignore	ignore, warning, message, stop	-
check.nlev.gtr.1	character	stop	ignore, warning, message, stop	-
check.nobs.vs.nRE	character	stop	ignore, warning, message, stop	-
check.rankX	character	message+drop.cols	message+drop.cols, silent.drop.cols, warn+drop.cols, stop.deficient, ignore	-
check.scaleX	character	warning	warning, stop, silent.rescale, message+rescale, warn+rescale, ignore	-
check.formula.LHS	character	stop	ignore, warning, message, stop	-
family	untyped	stats::binomial(link = "logit")		-
nAGQ	integer	1		\([0, \infty)\)
mustart	untyped	-		-
etastart	untyped	-		-
check.conv.grad	untyped	lme4::.makeCC("warning", tol = 2e-3, relTol = NULL)		-
check.conv.singular	untyped	lme4::.makeCC( action = "message", tol = formals(lme4::isSingular)$tol)		-
check.conv.hess	untyped	lme4::.makeCC(action = "warning", tol = 1e-6)		-
optCtrl	untyped	list		-
tolPwrss	untyped	-		-
compDev	logical	TRUE	TRUE, FALSE	-
nAGQ0initStep	logical	TRUE	TRUE, FALSE	-
check.response.not.const	untyped	stop		-
newparams	untyped			-
re.form	untyped			-
random.only	logical	FALSE	TRUE, FALSE	-
allow.new.levels	logical	FALSE	TRUE, FALSE	-
na.action	untyped	:: , stats , na.pass		-

References

Bates, M D (2010). “lme4: Mixed-effects modeling with R.”

See also

• Dictionary of Learners: mlr3::mlr_learners.

• as.data.table(mlr_learners) for a table of available Learners in the running session (depending on the loaded packages).

• Chapter in the mlr3book: https://mlr3book.mlr-org.com/basics.html#learners

• mlr3learners for a selection of recommended learners.

• mlr3cluster for unsupervised clustering learners.

• mlr3pipelines to combine learners with pre- and postprocessing steps.

• mlr3tuning for tuning of hyperparameters, mlr3tuningspaces for established default tuning spaces.

Author

sebffischer

Super classes

mlr3::Learner -> mlr3::LearnerClassif -> LearnerClassifGlmer

Methods

Public methods

• LearnerClassifGlmer$new()

• LearnerClassifGlmer$clone()

Inherited methods

• mlr3::Learner$base_learner()
• mlr3::Learner$format()
• mlr3::Learner$help()
• mlr3::Learner$predict()
• mlr3::Learner$predict_newdata()
• mlr3::Learner$print()
• mlr3::Learner$reset()
• mlr3::Learner$train()

---

Method new()

Creates a new instance of this R6 class.

Usage

LearnerClassifGlmer$new()

---

Method clone()

The objects of this class are cloneable with this method.

Usage

LearnerClassifGlmer$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

learner = mlr3::lrn("classif.glmer")
print(learner)
#> <LearnerClassifGlmer:classif.glmer>: Generalized Linear Mixed Effect Regression
#> * Model: -
#> * Parameters: family=<family>
#> * Packages: mlr3, lme4
#> * Predict Types:  [response], prob
#> * Feature Types: logical, integer, numeric, factor
#> * Properties: twoclass, weights

# available parameters:
learner$param_set$ids()
#>  [1] "formula"                  "start"                   
#>  [3] "verbose"                  "offset"                  
#>  [5] "contrasts"                "optimizer"               
#>  [7] "restart_edge"             "boundary.tol"            
#>  [9] "calc.derivs"              "check.nobs.vs.rankZ"     
#> [11] "check.nobs.vs.nlev"       "check.nlev.gtreq.5"      
#> [13] "check.nlev.gtr.1"         "check.nobs.vs.nRE"       
#> [15] "check.rankX"              "check.scaleX"            
#> [17] "check.formula.LHS"        "family"                  
#> [19] "nAGQ"                     "mustart"                 
#> [21] "etastart"                 "check.conv.grad"         
#> [23] "check.conv.singular"      "check.conv.hess"         
#> [25] "optCtrl"                  "tolPwrss"                
#> [27] "compDev"                  "nAGQ0initStep"           
#> [29] "check.response.not.const" "newparams"               
#> [31] "re.form"                  "random.only"             
#> [33] "allow.new.levels"         "na.action"