Changelog
mlr3extralearners 0.9.0
- Added response (i.e., survival time) prediction to
aorsf
learner - Updated support for flexsurv v2.3
- Fixed bug in catboost that caused invalid probability levels during
resample()
orbenchmark()
(#353) - the
$model
slot oflrn("classif.abess")
now contains the model of the upstream package again. - Add early stopping and validation support to learners
lrn("surv.xgboost.aft")
andlrn("surv.xgboost.cox")
. - Added early stopping and validation to catboost and lightgbm.
- Added missing
case.depth
parameter torfsrc
learners. -
mlr3
is now in Depends instead of Imports. - Deprecated learner
lrn("surv.xgboost")
was now removed. Uselrn("surv.xgboost.cox")
orlrn("surv.xgboost.aft")
instead. - Change xgboost default nrounds from 1 to 1000.
- remove obliqueRSF Learner which was long superseded by aorsf
- a lot of examples were added to the learners
mlr3extralearners 0.8.0
- Added
surv.xgboost.cox
andsurv.xgboost.aft
separate survival learners.distr
prediction on the cox xgboost learner is now estimated via Breslow by default and aft xgboost has now in addition aresponse
prediction (survival time) - Ported
surv.parametric
code tosurvivalmodels
, changedtype
parameter toform
to avoid conflict with survivalmodels’s default parameter list - Fix: Replace hardcoded
VectorDistribution
s from partykit and flexsurv survival learners with survival matrices (Matdist
) (thanks to @bblodfon) - Feat: Add
discrete
parameter insurv.parametric
learner to returnMatdist
survival predictions - Added method
selected_features()
to CoxBoost survival learners (thanks to @bblodfon) - Added the Random Planted Forest Learner (thanks to @jemus42)
- re-added the catboost learner as it was requested (was previously removed because of installation issues)
-
surv.ranger
now receives parameters during$predict()
(thanks to @jemus42) - Feature: Learner
surv.bart
was added (thanks to @bblodfon) - Parameters of
lrn("surv.aorsf")
were updated (thanks to @bcjaeger) - Various minor doc improvements
- Added the
distr
predict type to thesurv.cv_glmnet
andsurv.glmnet
learners (thanks to @bblodfon) - Feat: Added many new WEKA learners (thanks to @damirpolat)
- Fix:
I
andF
params from IBk learner are too interdependent (I
can only beTRUE
whenF
isFALSE
and vice versa). Combined them into one factor paramweight
that has two levels –I
andF
. - Fix:
U
must beFALSE
forS
to be tunable in J48 learner. - Compatibility with upcoming ‘paradox’ release.
mlr3extralearners 0.7.1
- Add parameter
perf.type
to rfsrc learners - Add vignette about “extending learners” which was previously in the mlr3book.
- Remove the
"multiclass"
property fromlrn("classif.gbm")
, as this feature is broken.
mlr3extralearners 0.7.0
- Add new parameters to lightgbm learners
- Add feature type
"factor"
to gam learners - Add new parameter
min.bucket
to ranger - Remove catboost learner (because the developers don’t properly take care of the R package)
- Add argument
nthreads
todbarts
learners; set verbose toFALSE
by default (thanks to @ck37) - Add new parameters to prioritylasso
- Fix: available levels for parameter of imbalanced random forest (typo)
mlr3extralearners 0.6.1
- BREAKING CHANGE: lightgbm’s early stopping mechanism now uses the task’s test set.
- feat: Add two new learners
regr.abess
andclassif.abess
(thanks to @bbayukari) - feat: Added learner
LearnerClassifImbalancedRandomForestSRC
(thanks to - Feat: Added learners
LearnerClassifPriorityLasso
,LearnerRegrPriorityLasso
,LearnerSurvPriorityLasso
(thanks to
mlr3extralearners 0.6.0
- Feat: Added learner
LearnerClassifGlmer
(https://github.com/mlr-org/mlr3extralearners/issues/243) - Fix: Failing xgboost parameter test
- Fix: Add arguments
nei
andncv.thread
that were added tomgcv::gam()
in version 1.8.41 - Fix: Added missing property
"weights"
toLearnerClassifGlmer
andLearnerRegrLmer
- Fix:
lightgbm
uses theparam_vals
stored in thestate
for hotstarting - Fix: Rely on
state$data_prototype
to get ordering of features viaordered_features()
like inmlr3learners
and therefore obviate the need to storefeature_names
in thestate
- Fix: extralearners are removed from
mlr_learners
when unloadingmlr3extralearners
mlr3extralearners 0.5.49
- Added missing feature type
"integer"
toclassif.randomForest
- Added missing feature type
"logical"
to {classif, regr}.randomForest
mlr3extralearners 0.5.48
- Add rsm learner
- fix
list_mlr3learners()
function. Now slower but correct. - Remove catboost from DESCRIPTION until it can be installed with pak
- Fix typos in test templates
- Update README
mlr3extralearners 0.5.47
- Add mlr3proba dependencies into remotes (no longer on CRAN)
- Correct documentation of gbm learner: default was incorrectly documented and the parameter was incorrectly referred to as
keep_data
instead ofkeep.data
- Add catboost to the dependencies
- Added
LearnerSurvAorsf
with keysurv.aorsf
. See https://github.com/bcjaeger/aorsf for more details onaorsf
mlr3extralearners 0.5.46
- Addresses https://github.com/mlr-org/mlr3extralearners/issues/225
- Fix link in README
- Fix learner status overview
mlr3extralearners 0.5.44
- Corrected parameters in lightgbm learners
- Implemented hotstarting for lightgbm learners
- Adjusted lightgbm train and predict methods to changes in lightgbm dev version (https://github.com/mlr-org/mlr3extralearners/issues/217)
- Added paramtests for lightgbm through webscraping
mlr3extralearners 0.5.43
- Clean up test files
- Fix installation of catboost in CI
- Fix the create_learner function
- Adjust templates for creation of learner
- Split up “Parameter Changes” in sections “Custom mlr3 parameters” and “Custom mlr3 defaults”
mlr3extralearners 0.5.42
Fix bug in C50 learner: Weights were not passed correctly
Remove kerdiest Learner because it is not being maintained on CRAN anymore
mlr3extralearners 0.5.41
Fix bugs in learners lmer and J48
Remove predict type proba from J48
Delay loading of mlr3proba learners
mlr3extralearners 0.5.40
-
lightgbm:
- Add parameter convert_categoricals
- Validation split not respects grouping / stratification
- Fixed bug
Docs: Renamed section “Custom mlr3 defaults” to “Parameter Changes”
Added labels to learners
mlr3extralearners 0.5.39
Remove extraTrees because it is no longer on CRAN and GH version has errors
Remove sketch_eps parameter from xgboost because it is no longer listed in the docs
mlr3extralearners 0.5.37
- Improve docs and change doc layout
- Fix typo in man-roxygen templates
- Port mlr3proba learners (mlr3proba is no longer on CRAN)
- Exclude relevant files in precommit
mlr3extralearners 0.5.35
- Full installatio in workflow ‘test_selection’ (is faster than the previous approach, where selected packages were installed from CRAN)
mlr3extralearners 0.5.33
- consistency: Use params in train and predict calls, even in learners that currently don’t have predict / train params. This allows easier correction of parameters by users.
mlr3extralearners 0.5.32
chore: add new parameters for kde and rfsrc
temporarily disable feat_all test for obliqeRSF (failed in $score() stage, because issue only happened in CI and could not be reproduced
mlr3extralearners 0.5.31
- Many non-standard tags were included in the learners, these are removed
- Some bugs in learners were fixed (survival rfsrc: “estimator” was incorrectly handled in .predict)
- Minor refactorings in train methods of learners
- Avoid partial argument matching: Some learners used “tag = …” instead of the correct “tags = …”
mlr3extralearners 0.5.25
- Introduce parameter
early_stopping_split
for lightgbm learners - Tidy description of R package
- Udpate NEWS.md for previous releases
mlr3extralearners 0.5.21
- Update files for creation of new learner
- Fixes regarding
create_learner
- CI modifications
mlr3extralearners 0.5.20
- Fix all parameter tests (run_paramtest was updated in mlr3 in November 2021)
- paramtests were moved from inst/paramtest to tests/testthat
- Change in the CI files: parameter tests and learner tests are now run together
- formatting and other minor corrections
mlr3extralearners 0.5.18
- Allow integer as feature types for RWeka learners
- Correction of RWeka tests
mlr3extralearners 0.5.7
- Introduced new custom hyperparameters for
randomForestSRC::rfsrc()
,partykit::cforest()
andobliqueRSF::ORSF()
to conveniently tune hyperparameters whose upper limit depends on data dimensions.
mlr3extralearners 0.5.6
- Fix learners requiring distr6. distr6 1.6.0 now forced and param6 added to suggests
mlr3extralearners 0.5.4
- Add
regr.gausspr
andclassif.gausspr
fromkernlab::gausspr
mlr3extralearners 0.5.3
- Fixed bugs in catboost for classification
- Removed factor feature types from catboost
- Added
install_catboost
to make installation from catboost simpler
mlr3extralearners 0.5.0
- Deprecated liblinear learners now removed
- Internal changes to ParamSet representation
- checkmate now imported
mlr3extralearners 0.4.7
- Moved
nnet
learners to mlr3learners
mlr3extralearners 0.4.0
- Added
LearnerRegrGam
andLearnerClassifGam
with keysregr.gam
andclassif.gam
from packagemgcv
.
mlr3extralearners 0.3.0
- Added
LearnerRegrLightGBM
andLearnerClassifLightGBM
with keysregr.lightgbm
andclassif.lightgbm
respectively. Copied from mlr3learners.lightgbm -
LearnerRegrLiblineaRX
andLearnerClassifLiblineaRX
deprecated in favour of only two learners (LearnerRegrLiblineaR
andLearnerClassLiblineaR
) with added hyper-parameters. Deprecated learners will be removed in v0.3.0. - Deprecated
classif.nnet
will be removed in v0.4.0. - Deprecated
liblinearX
will be removed in v0.4.0.
mlr3extralearners 0.2.0
-
dist = "logistic"
has been removed fromsurv.parametric
as it is unclear what this was previously predicting. - Added
type = "tobit"
fordist = "gaussian"
so predictions can correspond withsurvival::survreg
. - Added
LearnerRegrGlm
with the unique keyregr.glm
from packagestats
, which allows users to change thefamily
hyperparameter when fitting generalized linear regression models. - Minor internal changes
- Removed
keeptrees
parameter fromclassif.bart
as this is forced internally - Fixed incorrect response and probability predictions in
classif.bart
- Added hyper-parameters to
classif.earth
andregr.earth
- Added
se
predict type toregr.earth
- Fixed predictions in
regr.knn
andclassif.knn
mlr3extralearners 0.1.3
-
mlr3proba
moved toSuggests
-
install_learners
now additionally installs required mlr3 packages - Bugfix in
surv.parametric
occurring if feature names are switched between training and predicting - Deprecated
classif.nnet
, in the future please load from mlr3learners
mlr3extralearners 0.1.1
- Patch for bugs in
surv
learners that were reversing the order ofcrank
, see this issue for full details: https://github.com/mlr-org/mlr3proba/issues/165 -
response
is no longer returned bysurv.mboost
,surv.blackboost
,surv.glmboost
,surv.gamboost
orsurv.parametric
- Bugfix in
surv.parametric
withph
form - Bugfix in
survivalmodels
learners which weren’t returningdistr
-
surv.coxboost
andsurv.coxboost_cv
can now only handleinteger
andnumeric
feature types, previous automated internal coercions were inconsistent with mlr3 design.